EvanDB | Euplotes Genome Database Wiki

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Recent Papers

Acosta E, Nitsche F, Dorador C, Arndt H (2024) Protist communities of microbial mats from the extreme environments of five saline Andean lagoons at high altitudes in the Atacama Desert. Frontiers in microbiology 15:1356977
PUBMED:38572231

Alimenti C, Pedrini B, Luporini P, Jiang Y, Vallesi A (2024) Homo- and hetero-oligomeric protein-protein associations explain autocrine and heterologous pheromone-cell interactions in Euplotes. European journal of protistology 94:126075
PUBMED:38520753

Stefanov BA, Ajuh E, Allen S, Nowacki M (2024) Eukaryotic release factor 1 from Euplotes promotes frameshifting at premature stop codons in human cells. iScience 27:109413
PUBMED:38510117

BLAST Server at EvanDB

Click here for information about the BLAST process and help with advanced options.

BLAST Program

blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database

Database

Euplotes vannus (protein)
Euplotes vannus CDS (nucleotide)
Euplotes vannus Assembly (nucleotide)
Euplotes aediculatus (protein)
Euplotes aediculatus CDS (nucleotide)
Euplotes aediculatus Assembly (nucleotide)

Query Sequence Enter sequence below in FASTA format

Or load it from disk:
Set subsequence from to

Advanced Options

Filter for low copmlexity regions

Perform ungapped alignment

Expect
Matrix
Alignments

Query Genetic Codes (blastx only)
Database Genetic Codes (tblast[nx] only)

Other advanced options:

Wiki Links

External Links

Ciliate Genomics Consortium
Song Lab (OUC)

Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. The Ciliate.org project at Bradley University is supported by a grant from the National Center for Research Resources, part of the US National Institutes of Health.